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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000155426 | ||||||||
Common Name | MYB25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29026.4 Da PI: 7.8504 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl MDP0000155426 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+e +++++++lG++ W++Ia+ ++ gRt++++k++w++ MDP0000155426 67 RGNYSKEEEETIIKLHEKLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.779 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.79E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.52E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.99 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.24E-12 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MVRTPCRDEN GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY SKEEEETIIK LHEKLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRTNKKQ 120 CNSSFSSSAT NTEETPSSSN LEAAVDQPIK KAIFPNAEST TALQVIKKSD DRVDNSSQLS 180 SSPQPSSSEV SSMSADDNWV NFVEDFNLSS MEAYADNQFI DDFWTKPFLA DNSYIPSGFY 240 TPLMDSEFLY PLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16963 | 0.0 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280912.1 | 0.0 | myb-related protein Myb4-like | ||||
Swissprot | Q7XBH4 | 2e-61 | MYB4_ORYSJ; Myb-related protein Myb4 | ||||
TrEMBL | D9ZJ56 | 0.0 | D9ZJ56_MALDO; MYB domain class transcription factor | ||||
STRING | POPTR_0013s14560.1 | 6e-88 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-60 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000155426 |
Entrez Gene | 103442562 |